Statistics Department

VIGRE

Stat 366 - Computational Biology - Fall 2007

Instructor: Susan Holmes
Office: Sequoia Hall Room: 102
Office Hours: Monday, 2.10-3.15

Teaching Assistant: Philip Labo
Office: Sequoia Hall Room: 104
Office Hours: Monday, 11-12:45

Course Schedule
Week 1 09/24/07 Logistics Syllabus First Lecture
09/26/07 Calendar Genetics Slides Survey
Week 2 10/2/07 HMM (Bishop)
10/4/07 HW1 Markov Chains
Week 3 10/9/07 Likelihood Principle-Wikipedia Terry Speed on HMMs Transmembrane Helix recognition
10/11/07 What are Sequence Motifs?
Week 4 10/16/07 Gibbs Sampler Monte Carlo Markov chain HW2 File: gibbs.R
10/18/07 Korber Paper details Tree Tutorial-LANL Lab-HW 3 on Phylogeny
Week 6 10/30/07 Resources (from Woods Hole) Bayesian Phylogenetics, Ronquist Tutorial Mr Bayes Mr Bayes Tutorial
11/01/07 Confidence Statements for Trees Bioconductor Slides DNA Animations
Week 7 11/6/07 Bioconductor Book: Stanford License needed Clustering Microarray Data
Week 8 11/13/07 Lab:Hw5
Week 9 11/6/07 Correspondence Analysis: the duality diagram approach Interactive synonymous codon usage MADE4 paper
Week 10 12/4/07 Graphical Models Sam Roweis Slides on Graphical Models Kernel Methods for Graphs: JP Vert
  © 2007 Susan Holmes