There are a number of web-sites collecting historical references of genetics interest:

• ESP Foundations of Classical Genetics
• Image Archive on the American Eugenics Movement
• Galton.org, edited and maintained by Gavan Tredoux, has reproductions of many of Galton's publications.
• R.A. Fisher's work is all avaible at The University of Adelaide Digital Library

Below are some links to publications related to the topics we will discuss in class. It is by no means an exhaustive list and it is meant mainly as an organizational tool for the instructor. Sources actually used in the lectures are listed firsts under each topic, and are separated by others by some white space.

• Mendel's 1865 paper
• Fisher (1936) Analysis of Mendel's work

• Hardy's (1908) Science paper
• Diaconis (1977) Finite forms of deFinetti's theorem
• Structure's model for population structure
• Rosenberg et al (2002) Population structure paperdata on population structure
• Alexander et al. (2009) Admixure paper

• Novembre et al. (2008)
• EIGENSTRAT paper
• Laplacian eigenfunctions
• Engelhardt and Stephens (2010) Sparse factors paper
• A paper from Berkeley on detecting the presence of one subject in a pool

• Morgan's book
  
• Haldane (1919) Distance paper
• Zhao and Speed (1996) on genetic map functions
• Efron and Diaconis Chi-square interpretation
• Niu et al. (2002) Haplotyping algorithm

• Holliday junction
• Fisher (1947) Theory of linkage
• McPeek and Speed (1995) Modeling interference
• Recent empirical work on genetic maps: Jorgenson et al.
  Kong et al.
  Kong et al. (2010)
  McVean et al. (2004)
  Myears et al. (2005)
  
• Parent of origin effects
• recent paper on recombination in African Americans
• Lazzeroni & Lange MCMC methods
• volume measures
• Excoffier & Slatkin haplotyping with EM
• Daly et al (2001) Haplotype blocks paper.
• Scheet & Stephens (2006) haplotyping method
• BEAGLE paper
• Another bayesian method
• Dictionary model for haplotyping
• imputing ungenotyped SNPs
• Sabeti (2006) selection paper
• Sabeti et al. (2002) haplotype structure and selection

• Review
• Estimating pairwise relationships and the deFinetti triangle
• How considering multiple related loci helps distinguish relative types
• HMM tutorial
• HMM model for inbreeding
• The IBD process along four chromosomes

• reconstructing pedigrees
• Browning & Browning (2011) Reconstructing IBD
• Germline
• PLINK
• HMM version of structure
• Tang et al. (2006) ancestry reconstruction
• HAPMIX paper

• Fisher (1918) "Correlation between relatives..."
• Galton's height's data
• Risch 1. Multilocus models

• Risch 2. The power of affected relative pairs
• Risch 3. The effect of marker polymorphism
• Lange et al. Variance components
• Lange and Boehnke (1983) Covariance components for multivariate traits
• Review of heritability
• Missing heritability

• Morton (1955) LOD score
• Feingold et al. (1993) linkage through high resolution maps
• Hall et al. (1990) BRCA1 paper
• Schadt et al. (2003) eQTL paper

• Lander and Bobstein (1989) mapping mandelian factors
• Elston & Stewart (1971) algorithm
• Lander and Green (1987) paper
• Sobel and Lange (1996) Simwalk

• Risch and Merikangas
• Weighted tests
• stratified FDR control
• Genomic control
• ROADTRIPS
• Lasso
• Screen and clean and companion theory paper
• Bayesian variable selection -- to be published
• Zhang et al. (2011) Bayesian interaction model
• testing for untyped SNPs

• Smalley (1997)
• Risch et al. (1999)
• Weiss et al. (2009)
• Pinto et al. (2010)
• Hallmayer et al. (2011) ......